Results/Conclusions Our examples focus on two alternative 30-year hydrologic management plans that were ranked according to their overall impacts on wildlife habitat potential. We tested the assumption that varying the parameter settings and inputs of habitat index models does not change the rank order of the hydrologic plans. We compared the average projected index of habitat potential for four endemic species and two wading-bird guilds, to rank the alternative plans. Our analysis accounted for uncertainty in field-based parameter settings as well as drastic changes in water level inputs that simulate strong deviations from historic climate conditions. Indices of habitat potential were based upon projections from spatially explicit models that are closely tied to Everglades hydrology. Our analysis revealed striking differences in how the models responded to different types of uncertainty. We found that the rank order of the hydrologic plans was unaffected by substantial variation in the parameters of the reproductive model for the American alligator. By contrast, simulated major shifts in water levels led to reversals in the ranks of the hydrologic plans in 24.1% to 30.6% of the projections for the wading bird guilds and several individual species. Also, the relative impact of climate on habitat potential differed among the species and changed with geographic scale. By exposing the differential effects of uncertainty, relative assessment can help resource managers assess the robustness of scenario choice in model-based policy decisions.