Results/Conclusions Bacterial and fungal communities showed similar patterns of variation in our sample set. Overall, the plant species from which samples derived was the greatest influence on microbial community composition. However, this variation was largely due to unique microbial communities found in the root zones of native legumes from areas free of L. cuneata. Microbial communities from the root zones of L. cuneata were generally not statistically different from those of bulk soil or of co-occurring plants. However, sites with high densities of L. cuneata had microbial communities that were statistically distinct (p = 0.005) from sites with no or low densities of L. cuneata. This effect was consistent across the entire sampled range (i.e. independent of geographical differences). These results suggest that L. cuneata has a limited influence on soil microbial communities at the scale of individual plants, but it may exert a large influence on the local microbial species pool once it attains dominance at a site. This site-scale effect may feed back to plant fitness or to competitive interactions between L. cuneata and native legumes.