Using mensurative comparisons in a paired block design, we described the impact of tamarisk invasion on abiotic and biotic properties of the sediment ecosystem in three zones along an elevation and salinity gradient. In the low and high marshes, changes in physical and biological parameters between tamarisk-invaded and natural plots were minimal. In the middle marsh zone, the physical environment was significantly drier, less humid with lower temperatures and lower light levels. These physical changes were associated with increased microalgal biomass, an increased abundance of mites and insects, and a decreased density of marine oligochaetes and epifunal gastropods as compared to native treatment plots. This research emphasizes the habitat-altering consequences of tamarisk’s first foray into the marine realm while also revealing that each marsh habitat subject to tamarisk invasion will have to be managed with different eradication strategies.